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    ADAMTSL4-AS1 ADAMTSL4 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 574406, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ADAMTSL4-AS1provided by HGNC
    Official Full Name
    ADAMTSL4 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:32041
    See related
    Ensembl:ENSG00000143384 AllianceGenome:HGNC:32041
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C1orf138
    Expression
    Biased expression in placenta (RPKM 48.0), lung (RPKM 13.9) and 12 other tissues See more
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    Genomic context

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    See ADAMTSL4-AS1 in Genome Data Viewer
    Location:
    1q21.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (150560895..150574552, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (149684929..149698572, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (150533371..150547028, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ADAMTSL4 antisense RNA 2 Neighboring gene uncharacterized LOC124904417 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:150523090-150523779 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:150524269-150525138 Neighboring gene ADAMTS like 4 Neighboring gene microRNA 4257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1692 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:150534269-150535120 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:150535121-150535974 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:150539574-150540284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:150540285-150540996 Neighboring gene RNA, 7SL, cytoplasmic 473, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 600, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:150550344-150551543 Neighboring gene Sharpr-MPRA regulatory region 9 Neighboring gene uncharacterized LOC107985203 Neighboring gene MCL1 apoptosis regulator, BCL2 family member Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:150569961-150570462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:150570463-150570962 Neighboring gene uncharacterized LOC124900445

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    General gene information

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    Clone Names

    • FLJ45786

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104133.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356356
      Related
      ENST00000617352.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      150560895..150574552 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      149684929..149698572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001025493.1: Suppressed sequence

      Description
      NM_001025493.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5T5F5.1 GenPept UniProtKB/Swiss-Prot:Q5T5F5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials