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    LINC00937 long intergenic non-protein coding RNA 937 [ Homo sapiens (human) ]

    Gene ID: 389634, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00937provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 937provided by HGNC
    Primary source
    HGNC:HGNC:48629
    See related
    Ensembl:ENSG00000226091 AllianceGenome:HGNC:48629
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00937 in Genome Data Viewer
    Location:
    12p13.31
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (8356963..8390752, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (8370959..8404737, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (8509559..8543348, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5932 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:8472091-8472950 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:8472951-8473810 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 7 Neighboring gene 40S ribosomal protein S24-like Neighboring gene RPS3A pseudogene 43 Neighboring gene Sharpr-MPRA regulatory region 11326 Neighboring gene uncharacterized LOC124906977 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5933 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:8549829-8550330 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:8550331-8550830 Neighboring gene VPS51 pseudogene 3 Neighboring gene olfactory receptor family 7 subfamily E member 140 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LINC00937 suppresses keloid fibroblast proliferation and extracellular matrix deposition by targeting the miR-28-5p/MC1R axis. Wan J, et al. Histol Histopathol, 2021 Sep. PMID 34486677
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LINC00937 suppresses keloid fibroblast proliferation and extracellular matrix deposition by targeting the miR-28-5p/MC1R axis.
      Title: LINC00937 suppresses keloid fibroblast proliferation and extracellular matrix deposition by targeting the miR-28-5p/MC1R axis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024420.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092865, AI656939, BC073935
      Related
      ENST00000420040.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      8356963..8390752 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      8370959..8404737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001012988.1: Suppressed sequence

      Description
      NM_001012988.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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