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    OTX2-AS1 OTX2 antisense RNA 1 (head to head) [ Homo sapiens (human) ]

    Gene ID: 100309464, updated on 17-Sep-2024

    Summary

    Official Symbol
    OTX2-AS1provided by HGNC
    Official Full Name
    OTX2 antisense RNA 1 (head to head)provided by HGNC
    Primary source
    HGNC:HGNC:43906
    See related
    Ensembl:ENSG00000248550 AllianceGenome:HGNC:43906
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    OTX2OS1
    Expression
    Low expression observed in reference dataset See more
    NEW
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    Genomic context

    See OTX2-AS1 in Genome Data Viewer
    Location:
    14q22.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (56812006..56931308)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (51017800..51137188)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (57278724..57398026)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:57260608-57261532 Neighboring gene uncharacterized LOC124903322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:57263762-57264356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:57270522-57271360 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:57272200-57273038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:57278577-57279469 Neighboring gene orthodenticle homeobox 2 Neighboring gene RNA, U6 small nuclear 1204, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 461, pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:57313709-57314674 Neighboring gene VISTA enhancer hs1579 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:57361673-57362238 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:57369890-57370816 Neighboring gene VISTA enhancer hs1150 Neighboring gene uncharacterized LOC124903323 Neighboring gene VISTA enhancer hs1218 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:57457567-57457754 Neighboring gene ribosomal protein L3 pseudogene 3 Neighboring gene VISTA enhancer hs1791 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:57496239-57496890 Neighboring gene uncharacterized LOC124903324 Neighboring gene zinc finger CCHC-type containing 7 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • OTX2 antisense RNA 1 (non-protein coding)
    • Otx2 opposite strand transcript 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029385.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has multiple differences, including a 5' end that extends into an intron, resulting in a longer transcript compared to variant 2.
      Source sequence(s)
      AB593040, AL161757, BC041486
      Related
      ENST00000534909.2
    2. NR_146411.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents the shorter variant.
      Source sequence(s)
      AB593041, AL162831

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      56812006..56931308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      51017800..51137188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)