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    TRIM53AP tripartite motif containing 53A, pseudogene [ Homo sapiens (human) ]

    Gene ID: 642569, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TRIM53APprovided by HGNC
    Official Full Name
    tripartite motif containing 53A, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:19025
    See related
    Ensembl:ENSG00000225581 AllianceGenome:HGNC:19025
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TRIM53; TRIM53P; TRIM80P
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See TRIM53AP in Genome Data Viewer
    Location:
    11q14.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (89993541..90002508, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (89913703..89922678, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (89726709..89735676, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ANKRD33B pseudogene 9 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:89716992-89717989 Neighboring gene tripartite motif-containing 51E, pseudogene Neighboring gene tripartite motif containing 64B pseudogene Neighboring gene tripartite motif containing 49C Neighboring gene ANKRD33B pseudogene 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of a genomic reservoir for new TRIM genes in primate genomes. Han K, et al. PLoS Genet, 2011 Dec. PMID 22144910, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    Other Names

    • tripartite motif containing 53, pseudogene
    • tripartite motif-containing 49 pseudogene
    • tripartite motif-containing 53

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028346.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP004607, CA449274
      Related
      ENST00000532014.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      89993541..90002508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      89913703..89922678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001145126.1: Suppressed sequence

      Description
      NM_001145126.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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