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    BCRP2 BCR pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 400892, updated on 17-Jun-2024

    Summary

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    Official Symbol
    BCRP2provided by HGNC
    Official Full Name
    BCR pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:1015
    See related
    Ensembl:ENSG00000291044 AllianceGenome:HGNC:1015
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BCR2; BCR-2; BCRL2
    Expression
    Biased expression in testis (RPKM 26.7), brain (RPKM 2.5) and 3 other tissues See more
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    Genomic context

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    See BCRP2 in Genome Data Viewer
    Location:
    22q11.21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (21103016..21122286)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (21511794..21531059)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (21457305..21476575)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268300 Neighboring gene tubulin alpha 3g pseudogene Neighboring gene MPRA-validated peak4461 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:21456701-21457672 Neighboring gene POM121 transmembrane nucleoporin like 7 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:21483022-21483890 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:21498806-21499306 Neighboring gene E2F transcription factor 6 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:21507745-21507931 Neighboring gene MPRA-validated peak4462 silencer Neighboring gene MPRA-validated peak4464 silencer Neighboring gene family with sequence similarity 230 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Linear order of the four BCR-related loci in 22q11. Budarf M, et al. Genomics, 1988 Aug. PMID 3267213
    2. The DNA sequence of human chromosome 22. Dunham I, et al. Nature, 1999 Dec 2. PMID 10591208
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • breakpoint cluster region pseudogene 2
    • breakpoint cluster region-like 2

    Clone Names

    • FLJ36027, FLJ42953

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037566.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000550
      Related
      ENST00000691581.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      21103016..21122286
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      21511794..21531059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_007131.1: Suppressed sequence

      Description
      NG_007131.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NM_207474.1: Suppressed sequence

      Description
      NM_207474.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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