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    LOC100910558 uncharacterized LOC100910558 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910558, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC100910558provided by RGD
    Full Name
    uncharacterized LOC100910558provided by RGD
    Primary source
    RGD:6497980
    See related
    AllianceGenome:RGD:6497980
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564859
    Expression
    Biased expression in Heart (RPKM 156.8), Adrenal (RPKM 103.1) and 9 other tissues See more
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    Genomic context

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    See LOC100910558 in Genome Data Viewer
    Location:
    5q31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (102022125..102060125)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (96976181..97014187)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (100650512..100688185)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene nuclear factor I/B Neighboring gene uncharacterized LOC134486945 Neighboring gene uncharacterized LOC134486946 Neighboring gene uncharacterized LOC102551858 Neighboring gene transfer RNA histidine (anticodon GUG) 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. HAfTs are novel lncRNA transcripts from aflatoxin exposure. Merrick BA, et al. PLoS One, 2018. PMID 29351317, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110678.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      FM040412, FM052678, FM089179, FM099320, JAXUCZ010000005

    2. NR_110679.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two internal exons and uses an alternate splice site in the 3' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      FM040412, FM052678, FM089179, FM099320, FM110444, JAXUCZ010000005

    3. NR_110680.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two internal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      FM040412, FM089179, FM099320, JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      102022125..102060125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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