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    Spata9 spermatogenesis associated 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294594, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Spata9provided by RGD
    Official Full Name
    spermatogenesis associated 9provided by RGD
    Primary source
    RGD:1308291
    See related
    EnsemblRapid:ENSRNOG00000012770 AllianceGenome:RGD:1308291
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human SPATA9 (spermatogenesis associated 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 119.1), Kidney (RPKM 62.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Spata9 in Genome Data Viewer
    Location:
    2q11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (7197372..7235408)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (5465573..5504048)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (2729803..2768162)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene glutaredoxin Neighboring gene Rho-related BTB domain containing 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene Rieske (Fe-S) domain containing Neighboring gene G protein-coupled receptor 150 Neighboring gene arylsulfatase family, member K

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spermatogenesis-associated protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106399.1 → NP_001099869.2  spermatogenesis-associated protein 9

      See identical proteins and their annotated locations for NP_001099869.2

      Status: PROVISIONAL

      Source sequence(s)
      CH473955
      UniProtKB/TrEMBL
      A0A8I6G8H0, A6I4F4, D3ZFQ7
      Related
      ENSRNOP00000017068.4, ENSRNOT00000017068.7
      Conserved Domains (1) summary
      pfam15824
      Location:1 → 252
      SPATA9; Spermatogenesis-associated protein 9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      7197372..7235408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006231705.5 → XP_006231767.1  spermatogenesis-associated protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8I6G8H0
      Conserved Domains (1) summary
      pfam15824
      Location:1 → 220
      SPATA9; Spermatogenesis-associated protein 9
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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