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    Cyyr1 cysteine and tyrosine rich 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304138, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Cyyr1provided by RGD
    Official Full Name
    cysteine and tyrosine rich 1provided by RGD
    Primary source
    RGD:1359578
    See related
    AllianceGenome:RGD:1359578
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human CYYR1 (cysteine and tyrosine rich 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 900.5), Heart (RPKM 178.9) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cyyr1 in Genome Data Viewer
    Location:
    11q11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (38044003..38150391, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (24557620..24664007, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (24967936..25078740, complement)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene ATP synthase peripheral stalk subunit F6 Neighboring gene GA binding protein transcription factor subunit alpha Neighboring gene uncharacterized LOC134480962 Neighboring gene amyloid beta precursor protein Neighboring gene U6 spliceosomal RNA Neighboring gene nascent polypeptide associated complex subunit alpha, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cysteine and tyrosine-rich protein 1
    Names
    cysteine/tyrosine-rich 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013980.1 → NP_001014002.1  cysteine and tyrosine-rich protein 1 precursor

      See identical proteins and their annotated locations for NP_001014002.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087052
      UniProtKB/Swiss-Prot
      Q5PQS5
      UniProtKB/TrEMBL
      A6JL64
      Conserved Domains (1) summary
      pfam10873
      Location:7 → 154
      DUF2668; Protein of unknown function (DUF2668)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      38044003..38150391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270601.1 → XP_063126671.1  cysteine and tyrosine-rich protein 1 isoform X2

    2. XM_039088443.2 → XP_038944371.1  cysteine and tyrosine-rich protein 1 isoform X1

      Conserved Domains (1) summary
      pfam10873
      Location:7 → 59
      CYYR1; Cysteine and tyrosine-rich protein 1

    RNA

    1. XR_010055961.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PQS5.1 GenPept UniProtKB/Swiss-Prot:Q5PQS5

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