U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Bend7 BEN domain containing 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361275, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Bend7provided by RGD
    Official Full Name
    BEN domain containing 7provided by RGD
    Primary source
    RGD:1305898
    See related
    EnsemblRapid:ENSRNOG00000022712 AllianceGenome:RGD:1305898
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305898
    Summary
    Predicted to enable DNA binding activity. Orthologous to human BEND7 (BEN domain containing 7). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 111.7), Kidney (RPKM 90.7) and 7 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Bend7 in Genome Data Viewer
    Location:
    17q12.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (78392489..78475459, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (73483212..73566221, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (77448430..77527888, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097916 Neighboring gene selenophosphate synthetase 1 Neighboring gene uncharacterized LOC134482743 Neighboring gene cyclin-dependent kinases regulatory subunit 2 pseudogene Neighboring gene pre-mRNA processing factor 18 Neighboring gene F-box and leucine-rich repeat protein 14, pseudogene 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    BEN domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432309.1 → NP_001419238.1  BEN domain-containing protein 7 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017

    2. NM_001432310.1 → NP_001419239.1  BEN domain-containing protein 7 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      F1M8D4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      78392489..78475459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039096483.2 → XP_038952411.1  BEN domain-containing protein 7 isoform X3

      UniProtKB/TrEMBL
      A6JM00
      Related
      ENSRNOP00000102919.1, ENSRNOT00000143101.1
      Conserved Domains (1) summary
      smart01025
      Location:283 → 367
      BEN; The BEN domain is found in diverse animal proteins

    2. XM_039096482.2 → XP_038952410.1  BEN domain-containing protein 7 isoform X2

      Conserved Domains (1) summary
      smart01025
      Location:311 → 395
      BEN; The BEN domain is found in diverse animal proteins

    3. XM_039096481.2 → XP_038952409.1  BEN domain-containing protein 7 isoform X1

      Related
      ENSRNOP00000110711.1, ENSRNOT00000126225.1
      Conserved Domains (1) summary
      smart01025
      Location:311 → 395
      BEN; The BEN domain is found in diverse animal proteins

    4. XM_039096484.2 → XP_038952412.1  BEN domain-containing protein 7 isoform X5

      UniProtKB/TrEMBL
      A6JM00
      Conserved Domains (1) summary
      smart01025
      Location:266 → 350
      BEN; The BEN domain is found in diverse animal proteins

    5. XM_039096487.2 → XP_038952415.1  BEN domain-containing protein 7 isoform X4

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001191834.2: Suppressed sequence

      Description
      NM_001191834.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools