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    C5h1orf185 similar to human chromosome 1 open reading frame 185 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689589, updated on 17-Aug-2024

    Summary

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    Official Symbol
    C5h1orf185provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 185provided by RGD
    Primary source
    RGD:1591038
    See related
    EnsemblRapid:ENSRNOG00000009138 AllianceGenome:RGD:1591038
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be integral component of membrane. Orthologous to human C1orf185 (chromosome 1 open reading frame 185). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 287.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C5h1orf185 in Genome Data Viewer
    Location:
    5q35
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (129504609..129524506, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (124276074..124295881, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (129154544..129175596, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene ring finger protein 11 Neighboring gene RNA, U4 small nuclear 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene enolase 1, pseudogene 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C1orf185 homolog
    Names
    rCG50434-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271399.2 → NP_001258328.1  uncharacterized protein C1orf185 homolog

      See identical proteins and their annotated locations for NP_001258328.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6JYZ2
      Conserved Domains (1) summary
      pfam15842
      Location:7 → 188
      DUF4718; Domain of unknown function (DUF4718)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      129504609..129524506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110795.2 → XP_038966723.1  uncharacterized protein C1orf185 homolog isoform X3

      Conserved Domains (1) summary
      pfam15842
      Location:7 → 218
      DUF4718; Domain of unknown function (DUF4718)

    2. XM_063288442.1 → XP_063144512.1  uncharacterized protein C1orf185 homolog isoform X5

      UniProtKB/TrEMBL
      A6JYZ3, F1LT57
      Related
      ENSRNOP00000012112.7, ENSRNOT00000012112.9

    3. XM_039110796.2 → XP_038966724.1  uncharacterized protein C1orf185 homolog isoform X4

      Related
      ENSRNOP00000103616.1, ENSRNOT00000142061.1
      Conserved Domains (1) summary
      pfam15842
      Location:3 → 214
      DUF4718; Domain of unknown function (DUF4718)

    4. XM_039110793.2 → XP_038966721.1  uncharacterized protein C1orf185 homolog isoform X1

      Conserved Domains (1) summary
      pfam15842
      Location:56 → 267
      DUF4718; Domain of unknown function (DUF4718)

    5. XM_039110794.2 → XP_038966722.1  uncharacterized protein C1orf185 homolog isoform X2

      Conserved Domains (1) summary
      pfam15842
      Location:56 → 237
      DUF4718; Domain of unknown function (DUF4718)

    6. XM_039110797.2 → XP_038966725.1  uncharacterized protein C1orf185 homolog isoform X6

      Conserved Domains (1) summary
      pfam15842
      Location:56 → 148
      DUF4718; Domain of unknown function (DUF4718)
    Nucleotide Protein Strain
    Heading Accession and Version

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