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    Fsd1l fibronectin type III and SPRY domain containing 1-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313208, updated on 11-Jul-2024

    Summary

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    Official Symbol
    Fsd1lprovided by RGD
    Official Full Name
    fibronectin type III and SPRY domain containing 1-likeprovided by RGD
    Primary source
    RGD:1564809
    See related
    EnsemblRapid:ENSRNOG00000059876 AllianceGenome:RGD:1564809
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564809
    Summary
    Orthologous to human FSD1L (fibronectin type III and SPRY domain containing 1 like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 277.5), Muscle (RPKM 90.6) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fsd1l in Genome Data Viewer
    Location:
    5q24
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (73052565..73130292)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (68258877..68334931)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (70441075..70517131)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102551410 Neighboring gene uncharacterized LOC120102879 Neighboring gene solute carrier family 44 member 1 Neighboring gene uncharacterized LOC102551474 Neighboring gene chromobox protein homolog 3-like Neighboring gene fukutin Neighboring gene uncharacterized LOC134478974 Neighboring gene TAL bHLH transcription factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    FSD1-like protein; fibronectin type III and SPRY domain containing 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431171.1 → NP_001418100.1  fibronectin type III and SPRY domain containing 1-like isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    2. NM_001431172.1 → NP_001418101.1  fibronectin type III and SPRY domain containing 1-like isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    3. NM_001431173.1 → NP_001418102.1  fibronectin type III and SPRY domain containing 1-like isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    4. NM_001431174.1 → NP_001418103.1  fibronectin type III and SPRY domain containing 1-like isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      73052565..73130292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261284.1 → XP_063117354.1  FSD1-like protein isoform X4

    2. XM_008763722.4 → XP_008761944.1  FSD1-like protein isoform X1

      UniProtKB/TrEMBL
      A0A0G2JZ60, A0A8I6AAF2
      Related
      ENSRNOP00000070921.1, ENSRNOT00000087517.3
      Conserved Domains (3) summary
      cd00063
      Location:165 → 265
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:270 → 484
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
      cl23765
      Location:4 → 130
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    3. XM_008763723.4 → XP_008761945.1  FSD1-like protein isoform X2

      UniProtKB/TrEMBL
      A0A8I6AAF2
      Related
      ENSRNOP00000090606.2, ENSRNOT00000112399.2
      Conserved Domains (3) summary
      cd00063
      Location:165 → 265
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:270 → 473
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
      cl23765
      Location:4 → 130
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    4. XM_008763724.4 → XP_008761946.1  FSD1-like protein isoform X3

      UniProtKB/TrEMBL
      A0A8I6AAF2
      Conserved Domains (3) summary
      cd00063
      Location:165 → 265
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:270 → 472
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
      cl23765
      Location:4 → 130
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    5. XM_008763725.4 → XP_008761947.1  FSD1-like protein isoform X5

      See identical proteins and their annotated locations for XP_008761947.1

      UniProtKB/TrEMBL
      A0A8I6AAF2
      Related
      ENSRNOP00000109862.1, ENSRNOT00000168049.1
      Conserved Domains (3) summary
      cd00063
      Location:143 → 231
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:236 → 450
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
      cl23765
      Location:4 → 88
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    6. XM_039111026.1 → XP_038966954.1  FSD1-like protein isoform X6

      Conserved Domains (2) summary
      cd00063
      Location:52 → 140
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:145 → 359
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus

    7. XM_039111028.1 → XP_038966956.1  FSD1-like protein isoform X8

      Conserved Domains (2) summary
      cd00063
      Location:2 → 78
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:83 → 297
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus

    8. XM_039111027.2 → XP_038966955.1  FSD1-like protein isoform X7

      Conserved Domains (2) summary
      cd00063
      Location:16 → 118
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd12901
      Location:123 → 337
      SPRY_PRY_FSD1; Fibronectin type III and SPRY containing 1 (FSD1) domain includes PRY at the N-terminus
    Nucleotide Protein Strain
    Heading Accession and Version

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