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    TTTY10 testis expressed transcript, Y-linked 10 [ Homo sapiens (human) ]

    Gene ID: 246119, updated on 13-Nov-2024

    Summary

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    Official Symbol
    TTTY10provided by HGNC
    Official Full Name
    testis expressed transcript, Y-linked 10provided by HGNC
    Primary source
    HGNC:HGNC:18491
    See related
    Ensembl:ENSG00000229236 AllianceGenome:HGNC:18491
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TTY10; NCRNA00133; lnc-KDM5D-4
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See TTTY10 in Genome Data Viewer
    Location:
    Yq11.223
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (20465668..20519228, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (21340882..21394432, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (22627554..22681114, complement)

    Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 884, pseudogene Neighboring gene zinc finger protein 885, pseudogene Neighboring gene lysine demethylase 5D pseudogene 1 Neighboring gene eukaryotic translation initiation factor 1A Y-linked

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis. Zhu H, et al. World J Surg Oncol, 2017 Aug 10. PMID 28797257, Free PMC Article
    2. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • testis transcript Y 10
    • testis-specific transcript, Y-linked 10 (non-protein coding)
    • transcript Y 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001542.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745
      Related
      ENST00000455084.1

    2. NR_197935.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    3. NR_197936.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    4. NR_197937.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    5. NR_197938.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    6. NR_197939.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    7. NR_197940.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    8. NR_197941.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    9. NR_197942.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    10. NR_197943.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    11. NR_197944.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    12. NR_197945.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    13. NR_197946.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007678, AC011745

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

      Range
      20465668..20519228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060948.1 Alternate T2T-CHM13v2.0

      Range
      21340882..21394432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_139210.1: Suppressed sequence

      Description
      NM_139210.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.