U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC100506253 uncharacterized LOC100506253 [ Homo sapiens (human) ]

    Gene ID: 100506253, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100506253
    Gene description
    uncharacterized LOC100506253
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in colon (RPKM 2.6), duodenum (RPKM 1.4) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100506253 in Genome Data Viewer
    Location:
    4q13.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (75176655..75181296, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (78518776..78521444, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene prostate androgen-regulated mucin-like protein 1 Neighboring gene uncharacterized LOC107986289 Neighboring gene long intergenic non-protein coding RNA 2562 Neighboring gene Sharpr-MPRA regulatory region 9565 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76052289-76052985 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:76106257-76106757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76201500-76202127 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:76238240-76239439 Neighboring gene NANOG hESC enhancer GRCh37_chr4:76254685-76255186 Neighboring gene long intergenic non-protein coding RNA 2483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76326102-76326687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76326688-76327272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:76372915-76373483 Neighboring gene uncharacterized LOC107986230

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Markers

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      75176655..75181296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_109812.5 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      78518776..78521444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007074710.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials