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    LOC100130256 uncharacterized LOC100130256 [ Homo sapiens (human) ]

    Gene ID: 100130256, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100130256
    Gene description
    uncharacterized LOC100130256
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100130256 in Genome Data Viewer
    Location:
    2q31.1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (170615792..170712007, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (171092872..171189135, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (171472302..171568517, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene myosin IIIB Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:171196797-171197361 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:171210599-171211452 Neighboring gene Sharpr-MPRA regulatory region 12446 Neighboring gene MYO3B antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:171292127-171292772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:171292773-171293418 Neighboring gene high mobility group box 1 pseudogene 4 Neighboring gene NANOG hESC enhancer GRCh37_chr2:171508220-171508765 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:171536815-171537364 Neighboring gene MPRA-validated peak3923 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171538465-171539014 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12090 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171571431-171572220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171572221-171573008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:171573009-171573798 Neighboring gene ERICH2 divergent transcript Neighboring gene long intergenic non-protein coding RNA 1124 Neighboring gene Sp5 transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ25833, FLJ45491, AC007277.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187617.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    2. NR_187618.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    3. NR_187619.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    4. NR_187620.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    5. NR_187621.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    6. NR_187622.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    7. NR_187623.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    8. NR_187624.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    9. NR_187625.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    10. NR_187626.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    11. NR_187627.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    12. NR_187629.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    13. NR_187630.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277, AC007405

    14. NR_187631.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007277

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      170615792..170712007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      171092872..171189135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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