U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC158435 uncharacterized LOC158435 [ Homo sapiens (human) ]

    Gene ID: 158435, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC158435
    Gene description
    uncharacterized LOC158435
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC158435 in Genome Data Viewer
    Location:
    9q22.32
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (96065839..96101912)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (108237184..108273263)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98828121..98864194)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ERCC excision repair 6 like 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98785015-98785515 Neighboring gene uncharacterized LOC105376159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28649 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98788545-98789068 Neighboring gene long intergenic non-protein coding RNA 92 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:98850190-98851389 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:98869639-98870212 Neighboring gene uncharacterized LOC158434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98889065-98889595 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:98890980-98891503 Neighboring gene uncharacterized LOC112268039

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study of co-occurring anxiety in major depression.
    EBI GWAS Catalog

    General protein information

    Preferred Names
    uncharacterized protein LOC158435

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033838.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC064972

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      96065839..96101912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      108237184..108273263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_138497.1: Suppressed sequence

      Description
      NM_138497.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.