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    MAJIN membrane anchored junction protein [ Homo sapiens (human) ]

    Gene ID: 283129, updated on 3-Nov-2024

    Summary

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    Official Symbol
    MAJINprovided by HGNC
    Official Full Name
    membrane anchored junction proteinprovided by HGNC
    Primary source
    HGNC:HGNC:27441
    See related
    Ensembl:ENSG00000168070 MIM:617130; AllianceGenome:HGNC:27441
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C11orf85
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in homologous chromosome pairing at meiosis and meiotic attachment of telomere to nuclear envelope. Predicted to act upstream of or within double-strand break repair involved in meiotic recombination; oogenesis; and spermatogenesis. Predicted to be located in chromosome, telomeric region. Predicted to be active in nuclear inner membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis (RPKM 5.4) See more
    Orthologs
    mouse all
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    Genomic context

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    See MAJIN in Genome Data Viewer
    Location:
    11q13.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (64938230..64972108, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (64931487..64965377, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (64705702..64739580, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene autophagy related 2A Neighboring gene microRNA 6749 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3501 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4934 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:64691122-64691919 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3502 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3503 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:64694868-64696067 Neighboring gene protein phosphatase 2 regulatory subunit B'beta Neighboring gene glycoprotein hormone subunit alpha 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:64757136-64757663 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:64763842-64764342 Neighboring gene CRISPRi-validated cis-regulatory element chr11.3163 Neighboring gene basic leucine zipper ATF-like transcription factor 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:64773912-64775111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3504 Neighboring gene ARL2-SNX15 readthrough (NMD candidate) Neighboring gene microRNA 6879 Neighboring gene ARF like GTPase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Structural basis of meiotic telomere attachment to the nuclear envelope by MAJIN-TERB2-TERB1. Dunce JM, et al. Nat Commun, 2018 Dec 17. PMID 30559341, Free PMC Article
    2. MAJIN Links Telomeric DNA to the Nuclear Membrane by Exchanging Telomere Cap. Shibuya H, et al. Cell, 2015 Nov 19. PMID 26548954
    3. The meiotic TERB1-TERB2-MAJIN complex tethers telomeres to the nuclear envelope. Wang Y, et al. Nat Commun, 2019 Feb 4. PMID 30718482, Free PMC Article
    4. HDLBP Promotes Hepatocellular Carcinoma Proliferation and Sorafenib Resistance by Suppressing Trim71-dependent RAF1 Degradation. Yuan J, et al. Cell Mol Gastroenterol Hepatol, 2023. PMID 36244648, Free PMC Article
    5. USP9X deubiquitinates and stabilizes CDC123 to promote breast carcinogenesis through regulating cell cycle. Song N, et al. Mol Carcinog, 2023 Oct. PMID 37314216

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC126364

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair involved in meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in homologous chromosome pairing at meiosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in homologous chromosome pairing at meiosis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in meiotic attachment of telomere to nuclear envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in meiotic attachment of telomere to nuclear envelope ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in meiotic telomere clustering ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in oogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome, telomeric region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in nuclear inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nuclear inner membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    membrane-anchored junction protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037225.3 → NP_001032302.1  membrane-anchored junction protein isoform 1

      See identical proteins and their annotated locations for NP_001032302.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AP000436, BC033501, BC106951, DB445650, HY050994
      Consensus CDS
      CCDS31603.1
      UniProtKB/Swiss-Prot
      Q3KP22
      Related
      ENSP00000301896.5, ENST00000301896.6
      Conserved Domains (1) summary
      pfam15077
      Location:1 → 216
      MAJIN; Membrane-anchored junction protein

    2. NM_001300803.2 → NP_001287732.1  membrane-anchored junction protein isoform 2

      See identical proteins and their annotated locations for NP_001287732.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame segment and contains an alternate exon compared to variant 1, that causes a frameshift. The resulting isoform (2) lacks an alternate internal segment and has a longer and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AP000436, BC033501, DB445650
      Consensus CDS
      CCDS73316.1
      UniProtKB/Swiss-Prot
      B3KS99, E9PPE5, Q3KP22
      Related
      ENSP00000434568.1, ENST00000530444.5
      Conserved Domains (1) summary
      pfam15077
      Location:1 → 159
      MAJIN; Membrane-anchored junction protein

    3. NM_001318808.2 → NP_001305737.1  membrane-anchored junction protein isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction and lacks an alternate coding exon compared to variant 1. The resulting isoform (3) is shorter at the N-terminus and has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK093130, AP000436, AW449463, DB445650
      UniProtKB/Swiss-Prot
      Q3KP22
      Conserved Domains (1) summary
      pfam15077
      Location:1 → 131
      MAJIN; Membrane-anchored junction protein

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      64938230..64972108 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024448447.2 → XP_024304215.1  membrane-anchored junction protein isoform X2

      Conserved Domains (1) summary
      pfam15077
      Location:1 → 237
      MAJIN; Membrane-anchored junction protein

    2. XM_047426796.1 → XP_047282752.1  membrane-anchored junction protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0YTB5

    3. XM_047426798.1 → XP_047282754.1  membrane-anchored junction protein isoform X3

    4. XM_005273918.3 → XP_005273975.1  membrane-anchored junction protein isoform X2

      See identical proteins and their annotated locations for XP_005273975.1

      Conserved Domains (1) summary
      pfam15077
      Location:1 → 237
      MAJIN; Membrane-anchored junction protein

    5. XM_047426795.1 → XP_047282751.1  membrane-anchored junction protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0YTB5

    6. XM_047426797.1 → XP_047282753.1  membrane-anchored junction protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0YTB5

    7. XM_047426799.1 → XP_047282755.1  membrane-anchored junction protein isoform X4

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      64931487..64965377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054368470.1 → XP_054224445.1  membrane-anchored junction protein isoform X3

    2. XM_054368468.1 → XP_054224443.1  membrane-anchored junction protein isoform X2

    3. XM_054368465.1 → XP_054224440.1  membrane-anchored junction protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0YTB5

    4. XM_054368469.1 → XP_054224444.1  membrane-anchored junction protein isoform X2

    5. XM_054368466.1 → XP_054224441.1  membrane-anchored junction protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0YTB5

    6. XM_054368467.1 → XP_054224442.1  membrane-anchored junction protein isoform X1

      UniProtKB/TrEMBL
      A0A0P0YTB5

    7. XM_054368471.1 → XP_054224446.1  membrane-anchored junction protein isoform X4

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3KP22.2 GenPept UniProtKB/Swiss-Prot:Q3KP22

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