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    LOC101927552 uncharacterized LOC101927552 [ Homo sapiens (human) ]

    Gene ID: 101927552, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC101927552
    Gene description
    uncharacterized LOC101927552
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 2.9), thyroid (RPKM 1.4) and 24 other tissues See more
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    Genomic context

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    See LOC101927552 in Genome Data Viewer
    Location:
    9q21.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (83817666..83837583)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (95967352..95987319)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ubiquilin 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86321896-86322786 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86322787-86323675 Neighboring gene UBQLN1 antisense RNA 1 Neighboring gene uncharacterized LOC124902191 Neighboring gene G kinase anchoring protein 1 Neighboring gene MPRA-validated peak7279 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86419564-86420465 Neighboring gene MPRA-validated peak7280 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19978 Neighboring gene uncharacterized LOC124900638 Neighboring gene kinesin family member 27 Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:86535879-86536628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:86537243-86537747

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      83817666..83837583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001746793.2 RNA Sequence

    2. XR_001746789.2 RNA Sequence

    3. XR_001746790.2 RNA Sequence

    4. XR_001746791.3 RNA Sequence

    5. XR_001746785.2 RNA Sequence

    6. XR_001746784.2 RNA Sequence

    7. XR_002956861.2 RNA Sequence

    8. XR_001746788.2 RNA Sequence

    9. XR_001746794.2 RNA Sequence

    10. XR_001746795.2 RNA Sequence

    11. XR_007061619.1 RNA Sequence

    12. XR_007061618.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      95967352..95987319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007079614.1 RNA Sequence

    2. XR_007079611.1 RNA Sequence

    3. XR_007079612.1 RNA Sequence

    4. XR_007079605.1 RNA Sequence

    5. XR_007079609.1 RNA Sequence

    6. XR_007079608.1 RNA Sequence

    7. XR_007079613.1 RNA Sequence

    8. XR_007079610.1 RNA Sequence

    9. XR_007079615.1 RNA Sequence

    10. XR_007079616.1 RNA Sequence

    11. XR_007079607.1 RNA Sequence

    12. XR_007079606.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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