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    FAM86FP family with sequence similarity 86 member F, pseudogene [ Homo sapiens (human) ]

    Gene ID: 653113, updated on 17-Jun-2024

    Summary

    Official Symbol
    FAM86FPprovided by HGNC
    Official Full Name
    family with sequence similarity 86 member F, pseudogeneprovided by HGNC
    Gene description
    family with sequence similarity 86, member A pseudogene
    Primary source
    HGNC:HGNC:42357
    See related
    AllianceGenome:HGNC:42357
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in ovary (RPKM 1.6), endometrium (RPKM 1.4) and 25 other tissues See more
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    Genomic context

    See FAM86FP in Genome Data Viewer
    Location:
    12p13.31
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (8231049..8242946, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (8245121..8257019, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (8383645..8395542, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 66 member C Neighboring gene defensin beta 109F (pseudogene) Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:8375857-8377056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5931 Neighboring gene family with sequence similarity 90 member A1 Neighboring gene ALG1 like 10, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:8390159-8390659 Neighboring gene long intergenic non-protein coding RNA 2449 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4209 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4211 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4212 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4213 Neighboring gene uncharacterized LOC112268090 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:8396767-8397266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:8404422-8404982 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:8432901-8433710 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:8437184-8438383 Neighboring gene uncharacterized LOC107987171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5932 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:8472091-8472950

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024254.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC092111

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      8231049..8242946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      8245121..8257019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)