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    SNORD3D small nucleolar RNA, C/D box 3D [ Homo sapiens (human) ]

    Gene ID: 780854, updated on 28-Oct-2024

    Summary

    Official Symbol
    SNORD3Dprovided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 3Dprovided by HGNC
    Primary source
    HGNC:HGNC:33192
    See related
    Ensembl:ENSG00000281000 AllianceGenome:HGNC:33192
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U3-4; RNU3-4
    Summary
    Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Oct 2024]
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    Genomic context

    See SNORD3D in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (19112420..19112636, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (19087444..19087660)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (19015733..19015949, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene kynureninase pseudogene 2 Neighboring gene uncharacterized protein ENSP00000382042-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11849 Neighboring gene uncharacterized LOC124903946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19026149-19026648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19030843-19031574 Neighboring gene GRB2 related adaptor protein like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19044151-19044752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19044753-19045353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19046411-19046923 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19047949-19048460 Neighboring gene GRAPL antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19061738-19062263

    Genomic regions, transcripts, and products

    General gene information

    Other Names

    • U3 small nucleolar RNA D
    • U3 snoRNA D

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_006882.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007952
      Related
      ENST00000630092.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      19112420..19112636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      19087444..19087660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)