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    1700009N14Rik RIKEN cDNA 1700009N14 gene [ Mus musculus (house mouse) ]

    Gene ID: 75471, updated on 2-Nov-2024

    Summary

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    Official Symbol
    1700009N14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700009N14 geneprovided by MGI
    Primary source
    MGI:MGI:1922721
    See related
    Ensembl:ENSMUSG00000028287 AllianceGenome:MGI:1922721
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Enables protein domain specific binding activity. Predicted to be involved in protein import into nucleus and ribosomal subunit export from nucleus. Predicted to be active in cytoplasm and nucleus. Is expressed in brain ventricular layer; orbito-sphenoid; submandibular gland primordium; and vibrissa. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 267.1) See more
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    Genomic context

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    See 1700009N14Rik in Genome Data Viewer
    Location:
    4 A5; 4 20.16 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (39450293..39451780)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (39450293..39451780)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_09973 Neighboring gene predicted gene, 53201 Neighboring gene predicted gene 17094 Neighboring gene STARR-seq mESC enhancer starr_09974 Neighboring gene predicted gene, 42271 Neighboring gene STARR-seq mESC enhancer starr_09975 Neighboring gene STARR-seq mESC enhancer starr_09976 Neighboring gene STARR-seq mESC enhancer starr_09977 Neighboring gene STARR-seq mESC enhancer starr_09978 Neighboring gene STARR-seq mESC enhancer starr_09979 Neighboring gene predicted gene, 34007 Neighboring gene ribosomal protein L7A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Very-KIND, a KIND domain containing RasGEF, controls dendrite growth by linking Ras small GTPases and MAP2. Huang J, et al. J Cell Biol, 2007 Nov 5. PMID 17984326, Free PMC Article
    2. Plasticity in the Glucagon Interactome Reveals Novel Proteins That Regulate Glucagon Secretion in α-TC1-6 Cells. Asadi F, et al. Front Endocrinol (Lausanne), 2018. PMID 30713523, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein domain specific binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosomal subunit export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC75471
    Names
    novel Ras protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081095.1 → NP_001074564.1  uncharacterized protein LOC75471

      See identical proteins and their annotated locations for NP_001074564.1

      Status: PREDICTED

      Source sequence(s)
      AL807385
      Consensus CDS
      CCDS38709.1
      UniProtKB/TrEMBL
      Q14AA6, Q3ULW0
      Related
      ENSMUSP00000029955.5, ENSMUST00000029955.5
      Conserved Domains (2) summary
      cd00877
      Location:11 → 176
      Ran; Ras-related nuclear proteins (Ran)/TC4 family of small GTPases
      PTZ00132
      Location:1 → 216
      PTZ00132; GTP-binding nuclear protein Ran; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      39450293..39451780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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