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    ISM1-AS1 ISM1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100505536, updated on 17-Sep-2024

    Summary

    Official Symbol
    ISM1-AS1provided by HGNC
    Official Full Name
    ISM1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44313
    See related
    AllianceGenome:HGNC:44313
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See ISM1-AS1 in Genome Data Viewer
    Location:
    20p12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (13237420..13239687, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (13280733..13283000, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (13218067..13220334, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1722 Neighboring gene Sharpr-MPRA regulatory region 3567 Neighboring gene long intergenic non-protein coding RNA 1723 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:12980521-12980692 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:13010129-13011328 Neighboring gene serine palmitoyltransferase long chain base subunit 3 Neighboring gene CENATAC pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17550 Neighboring gene taspase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12677 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12678 Neighboring gene Sharpr-MPRA regulatory region 1935 Neighboring gene Sharpr-MPRA regulatory region 7489 Neighboring gene isthmin 1 Neighboring gene uncharacterized LOC124904872 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:13337123-13337628 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:13338225-13339146 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:13342069-13342904 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:13342905-13343739 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040043.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL050320, BC038745, BX092222, DB453950

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      13237420..13239687 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      13280733..13283000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)