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    LOC645261 PP565 [ Homo sapiens (human) ]

    Gene ID: 645261, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC645261
    Gene description
    PP565
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC645261 in Genome Data Viewer
    Location:
    5q14.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (87048906..87056242, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (87529248..87536584, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (86344723..86352059, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2059 Neighboring gene MPRA-validated peak5330 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_86917 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:86173964-86174498 Neighboring gene ribosomal protein L10a pseudogene 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:86224749-86225498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22747 Neighboring gene MIR4280 host gene Neighboring gene uncharacterized LOC105379065 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22749 Neighboring gene MPRA-validated peak5331 silencer Neighboring gene RN7SK pseudogene 34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188227.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC109492

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      87048906..87056242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      87529248..87536584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039781.1: Suppressed sequence

      Description
      NM_001039781.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein
    Heading Accession and Version

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