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    LINC02910 long intergenic non-protein coding RNA 2910 [ Homo sapiens (human) ]

    Gene ID: 284756, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC02910provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2910provided by HGNC
    Primary source
    HGNC:HGNC:26601
    See related
    Ensembl:ENSG00000228340 AllianceGenome:HGNC:26601
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C20orf197
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC02910 in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (60055925..60072953)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (61840217..61857242)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (58630980..58648008)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13091 Neighboring gene Sharpr-MPRA regulatory region 25 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:58529519-58530020 Neighboring gene family with sequence similarity 217 member B Neighboring gene protein phosphatase 1 regulatory subunit 3D Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:58569287-58569819 Neighboring gene cadherin 26 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:58611565-58612066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:58612067-58612566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18192 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18193 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:58633003-58633804 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:58677553-58677708 Neighboring gene uncharacterized LOC729296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:58686253-58686792 Neighboring gene MIR646 host gene Neighboring gene ReSE screen-validated silencer GRCh37_chr20:58786198-58786437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:58788309-58788809 Neighboring gene uncharacterized LOC105372698 Neighboring gene NANOG hESC enhancer GRCh37_chr20:58847405-58847906

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126504.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) shares the 5' terminal exon but lacks the remaining exons, and instead contains an alternate 3' terminal exon, compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
      Source sequence(s)
      AK091179, BU730836
      Related
      ENST00000647608.3
    2. NR_161291.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL132822
      Related
      ENST00000625080.1
    3. NR_161292.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL132822
      Related
      ENST00000660831.1
    4. NR_161293.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL132822

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      60055925..60072953
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      61840217..61857242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)