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    LINC02994 long intergenic non-protein coding RNA 2994 [ Homo sapiens (human) ]

    Gene ID: 101928978, updated on 17-Aug-2024

    Summary

    Official Symbol
    LINC02994provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2994provided by HGNC
    Primary source
    HGNC:HGNC:56109
    See related
    Ensembl:ENSG00000250546
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02994 in Genome Data Viewer
    Location:
    4q21.23
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (83968082..84299169, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (87297989..87629143, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (84889235..85220322, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:84469077-84470276 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15543 Neighboring gene Sharpr-MPRA regulatory region 7334 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:84539256-84540455 Neighboring gene Sharpr-MPRA regulatory region 4612 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:84557857-84558358 Neighboring gene glycerol-3-phosphate acyltransferase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21689 Neighboring gene VISTA enhancer hs712 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:84702313-84703031 Neighboring gene uncharacterized LOC105377315 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:84771617-84772228 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:84771005-84771616 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:84775825-84777024 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:84843248-84843790 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:84843791-84844331 Neighboring gene NANOG hESC enhancer GRCh37_chr4:84917176-84917884 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:85048206-85048769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85165003-85165976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85165977-85166950 Neighboring gene heart enhancer 9 Neighboring gene RNA, U6 small nuclear 774, pseudogene Neighboring gene PLAG1 like zinc finger 2 pseudogene Neighboring gene VISTA enhancer hs680 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85257789-85258318 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85258319-85258846 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:85263663-85264162 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:85283860-85284085 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85299952-85300636 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85306108-85306821 Neighboring gene NANOG hESC enhancer GRCh37_chr4:85334758-85335365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85402785-85403285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85404850-85405688 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:85413525-85414416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:85416773-85417273 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15544 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15545 Neighboring gene uncharacterized LOC102723338 Neighboring gene NK6 homeobox 1 Neighboring gene ribosomal protein L3 pseudogene 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125909.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC114764, AK095285
      Related
      ENST00000508406.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      83968082..84299169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      87297989..87629143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)