U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    YAE1-DT YAE1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105375240, updated on 22-Oct-2024

    Summary

    Official Symbol
    YAE1-DTprovided by HGNC
    Official Full Name
    YAE1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55820
    See related
    Ensembl:ENSG00000227172 AllianceGenome:HGNC:55820
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See YAE1-DT in Genome Data Viewer
    Location:
    7p14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (39551329..39566349, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (39708885..39723890, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (39590928..39605948, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene POU class 6 homeobox 2 Neighboring gene uncharacterized LOC105375238 Neighboring gene NANOG hESC enhancer GRCh37_chr7:39502080-39502581 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39504601-39505102 Neighboring gene uncharacterized LOC105375237 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:39547614-39548813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25876 Neighboring gene MPRA-validated peak6497 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25878 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:39629115-39629662 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18111 Neighboring gene TMX1 pseudogene 1 Neighboring gene akirin 1 pseudogene Neighboring gene YAE1 maturation factor of ABCE1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187579.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011290
      Related
      ENST00000728974.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      39551329..39566349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      39708885..39723890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)