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    LINC03026 long intergenic non-protein coding RNA 3026 [ Homo sapiens (human) ]

    Gene ID: 102724156, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC03026provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3026provided by HGNC
    Primary source
    HGNC:HGNC:56164
    See related
    Ensembl:ENSG00000287750 AllianceGenome:HGNC:56164
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 10.2), small intestine (RPKM 1.3) and 6 other tissues See more
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    Genomic context

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    See LINC03026 in Genome Data Viewer
    Location:
    9q22.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (88066435..88077900, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (100220527..100231992, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90681350..90692815, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 86, pseudogene Neighboring gene ribosomal protein S10 pseudogene 3 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:90640714-90641479 Neighboring gene syncytin-A-like Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:90684410-90684966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:90691513-90692063 Neighboring gene uncharacterized LOC124902202 Neighboring gene uncharacterized LOC124902203

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135137.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AI796209, BX090418, DB461465, DB526875
      Related
      ENST00000822453.1

    2. NR_135138.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate internal exon resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AI796209, BX090418, BX377179, DB461465

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      88066435..88077900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      100220527..100231992 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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