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    igl1c1 immunoglobulin light 1 constant 1 [ Danio rerio (zebrafish) ]

    Gene ID: 101884804, updated on 12-Sep-2024

    Summary

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    Official Symbol
    igl1c1provided by ZNC
    Official Full Name
    immunoglobulin light 1 constant 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-111021-9
    See related
    Ensembl:ENSDARG00000069839 AllianceGenome:ZFIN:ZDB-GENE-111021-9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    NLC106; igic2s2
    Orthologs
    all
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    Genomic context

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    See igl1c1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (58675886..58680051)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (58606853..58620762)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 3 Neighboring gene stonustoxin subunit beta-like Neighboring gene dehydrogenase/reductase (SDR family) member 7Ca Neighboring gene NACHT, LRR and PYD domains-containing protein 5-like Neighboring gene immunoglobulin light 1 variable 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Immunoglobulin light chain (IgL) genes in zebrafish: Genomic configurations and inversional rearrangements between (V(L)-J(L)-C(L)) gene clusters. Zimmerman AM, et al. Dev Comp Immunol, 2008. PMID 18022691, Free PMC Article
    2. Targeted annotation of immunoglobulin light chain (IgL) genes in zebrafish from BAC clones reveals kappa-like recombining/deleting elements within IgL constant regions. Zimmerman AM, et al. Fish Shellfish Immunol, 2011 Nov. PMID 20933599
    3. Characterization of three isotypes of immunoglobulin light chains and T-cell antigen receptor alpha in zebrafish. Haire RN, et al. Immunogenetics, 2000 Sep. PMID 11003385
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    T-cell receptor beta chain V region A20.2.25; immunoglobulin lambda-1 light chain
    Names
    immunoglobulin light chain VJC region
    immunoglobulin light chain constant region
    immunoglobulin light iota constant 2, s2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      58675886..58680051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474765.2 → XP_021330440.1  immunoglobulin lambda-1 light chain

      Related
      ENSDART00000101970.5
      Conserved Domains (2) summary
      cd07699
      Location:137 → 234
      IgC_L; Immunoglobulin Constant domain
      cl11960
      Location:21 → 130
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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