lsp1b lymphocyte specific protein 1 b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lsp1bprovided by ZNC
Official Full Name: lymphocyte specific protein 1 bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-141222-12
See related: Ensembl:ENSDARG00000099385 AllianceGenome:ZFIN:ZDB-GENE-141222-12
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-223l2.4; si: ch211-223l2.4
Summary: Predicted to enable actin binding activity; calmodulin binding activity; and myosin binding activity. Predicted to act upstream of or within muscle contraction and signal transduction. Orthologous to human LSP1 (lymphocyte specific protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (39410177..39440071)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (39139131..39169042)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info
enables calmodulin binding	IEA Inferred from Electronic Annotation more info
enables myosin binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within muscle contraction	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lymphocyte specific protein 1 b

Names: caldesmon, smooth muscle-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.