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    LINC03062 long intergenic non-protein coding RNA 3062 [ Homo sapiens (human) ]

    Gene ID: 100129066, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC03062provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3062provided by HGNC
    Primary source
    HGNC:HGNC:56369
    See related
    Ensembl:ENSG00000237372 AllianceGenome:HGNC:56369
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC03062 in Genome Data Viewer
    Location:
    9q22.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (89639783..89719759)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (101803707..101884333)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (92254698..92334674)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902207 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92167973-92168574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28554 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92179407-92179906 Neighboring gene uncharacterized LOC105376139 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92218738-92219636 Neighboring gene NANOG hESC enhancer GRCh37_chr9:92226260-92226808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92229340-92229881 Neighboring gene growth arrest and DNA damage inducible gamma Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92254441-92255010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92263300-92263809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92269903-92270434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92276688-92277224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92277225-92277762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92277763-92278299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92290615-92291265 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:92291266-92291915 Neighboring gene VISTA enhancer hs1339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92300659-92301230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20017 Neighboring gene uncharacterized LOC105376140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92313261-92313762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92313763-92314262 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92316238-92317437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92327190-92327690 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:92332512-92332723 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28556 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92450186-92450697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92458811-92459312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92459313-92459812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:92493341-92493841 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:92494129-92494294 Neighboring gene uncharacterized LOC107987032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28559 Neighboring gene uncharacterized LOC101927823

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Clark HF, et al. Genome Res, 2003 Oct. PMID 12975309, Free PMC Article
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ42342, FLJ44435

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024280.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK124333, AK126399, AL161910, AL606807
      Related
      ENST00000617436.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      89639783..89719759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      101803707..101884333
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.