U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC02208 long intergenic non-protein coding RNA 2208 [ Homo sapiens (human) ]

    Gene ID: 101927280, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02208provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2208provided by HGNC
    Primary source
    HGNC:HGNC:52978
    See related
    AllianceGenome:HGNC:52978
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HRAT56
    Expression
    Restricted expression toward heart (RPKM 2.3) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC02208 in Genome Data Viewer
    Location:
    5q23.1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (118350966..118562117, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (118863531..119075129, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (117686661..117897812, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2147 Neighboring gene uncharacterized LOC124901051 Neighboring gene long intergenic non-protein coding RNA 2148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:117718500-117719000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:117719001-117719501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:117740966-117741466 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_80810 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:117814027-117815226 Neighboring gene long intergenic non-protein coding RNA 2216 Neighboring gene long intergenic non-protein coding RNA 2215

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • CTD-2281M20.1
    • heart tissue-associated transcript 56

    Clone Names

    • DKFZp779A1168

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104610.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC114279, AC114311, AC136426

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      118350966..118562117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      118863531..119075129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)