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    SNORD13 small nucleolar RNA, C/D box 13 [ Homo sapiens (human) ]

    Gene ID: 692084, updated on 28-Oct-2024

    Summary

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    Official Symbol
    SNORD13provided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 13provided by HGNC
    Primary source
    HGNC:HGNC:32711
    See related
    Ensembl:ENSG00000239039 MIM:616664; AllianceGenome:HGNC:32711
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U13; RNU13; SNORD13A
    Summary
    Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Oct 2024]
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    Genomic context

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    See SNORD13 in Genome Data Viewer
    Location:
    8p12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (33513475..33513578)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (33784825..33784928)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (33370993..33371096)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 10 Neighboring gene RNA binding motif protein 4 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19094 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27218 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:33341856-33342492 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:33342520-33342707 Neighboring gene MAK16 homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27221 Neighboring gene thymosin beta 4 X-linked pseudogene Neighboring gene TELO2 interacting protein 2 Neighboring gene MPRA-validated peak6988 silencer Neighboring gene uncharacterized LOC124900261

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel intron-encoded small nucleolar RNAs with long sequence complementarities to mature rRNAs involved in ribosome biogenesis. Bachellerie JP, et al. Biochem Cell Biol, 1995 Nov-Dec. PMID 8721999
    2. Processing of mammalian rRNA precursors at the 3' end of 18S rRNA. Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA. Cavaillé J, et al. Eur J Biochem, 1996 Dec 1. PMID 8973634
    3. The numerous modified nucleotides in eukaryotic ribosomal RNA. Maden BE. Prog Nucleic Acid Res Mol Biol, 1990. PMID 2247610
    4. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. Tyc K, et al. EMBO J, 1989 Oct. PMID 2531075, Free PMC Article
    5. The deubiquitinase USP36 promotes snoRNP group SUMOylation and is essential for ribosome biogenesis. Ryu H, et al. EMBO Rep, 2021 Jun 4. PMID 33852194, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003041.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091144
      Related
      ENST00000459299.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      33513475..33513578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      33784825..33784928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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