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    CDKN2AIPNL CDKN2A interacting protein N-terminal like [ Homo sapiens (human) ]

    Gene ID: 91368, updated on 28-Oct-2024

    Summary

    Official Symbol
    CDKN2AIPNLprovided by HGNC
    Official Full Name
    CDKN2A interacting protein N-terminal likeprovided by HGNC
    Primary source
    HGNC:HGNC:30545
    See related
    Ensembl:ENSG00000237190 AllianceGenome:HGNC:30545
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C2AIL
    Expression
    Ubiquitous expression in thyroid (RPKM 3.8), testis (RPKM 3.7) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CDKN2AIPNL in Genome Data Viewer
    Location:
    5q31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (134402065..134411881, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (134925882..134938449, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (133737756..133747572, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein S13 pseudogene 6 Neighboring gene MPRA-validated peak5475 silencer Neighboring gene cyclin dependent kinase like 3 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133680746-133681444 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133681445-133682144 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133706379-133706974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23143 Neighboring gene ubiquitin conjugating enzyme E2 B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133746964-133747702 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133747703-133748440 Neighboring gene MPRA-validated peak5476 silencer Neighboring gene ribosomal protein S10 pseudogene 11 Neighboring gene long intergenic non-protein coding RNA 2999

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    CDKN2AIP N-terminal-like protein
    Names
    CDKN2A-interacting protein N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_080656.3NP_542387.1  CDKN2AIP N-terminal-like protein

      See identical proteins and their annotated locations for NP_542387.1

      Status: VALIDATED

      Source sequence(s)
      BC008293, BM997508
      Consensus CDS
      CCDS4175.1
      UniProtKB/Swiss-Prot
      Q8WVE3, Q96HQ2
      Related
      ENSP00000394183.2, ENST00000458198.3
      Conserved Domains (1) summary
      pfam11952
      Location:25113
      XTBD; XRN-Two Binding Domain, XTBD

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      134402065..134411881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      134925882..134938449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054353770.1XP_054209745.1  CDKN2AIP N-terminal-like protein isoform X1