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    LINC02203 long intergenic non-protein coding RNA 2203 [ Homo sapiens (human) ]

    Gene ID: 727924, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC02203provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2203provided by HGNC
    Primary source
    HGNC:HGNC:53069
    See related
    Ensembl:ENSG00000284988 AllianceGenome:HGNC:53069
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 11.6) See more
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    Genomic context

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    See LINC02203 in Genome Data Viewer
    Location:
    15q11.2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (21552773..21640521)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (22195583..22199978)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene microRNA 5701-2 Neighboring gene olfactory receptor family 11 subfamily J member 1 pseudogene Neighboring gene olfactory receptor 11H12-like Neighboring gene olfactory receptor family 11 subfamily K member 1B pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene olfactory receptor family 4 subfamily H member 6B pseudogene Neighboring gene olfactory receptor family 4 subfamily M member 2B Neighboring gene olfactory receptor family 4 subfamily N member 4C Neighboring gene olfactory receptor family 4 subfamily N member 3B pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Lineage-specific gene duplication and loss in human and great ape evolution. Fortna A, et al. PLoS Biol, 2004 Jul. PMID 15252450, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ40279

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015416.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC135068, BC062994, BI560827

    2. NR_152818.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BI560827, DQ786202
      Related
      ENST00000643304.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      21552773..21640521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160017.1 Reference GRCh38.p14 PATCHES

      Range
      2141939..2229684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187602.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      310612..405685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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