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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_052856.1 RefSeqGene
- Range
-
5028..27923
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001348262.2 → NP_001335191.1 TBC1 domain family member 25 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (a).
- Source sequence(s)
-
AC115618, AF196969, BC101817, BE279778, BU630180, HY154299
- UniProtKB/TrEMBL
-
B9A6M7
- Conserved Domains (1) summary
-
- smart00164
Location:241 → 470
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_001348263.2 → NP_001335192.1 TBC1 domain family member 25 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses two alternate in-frame splice junctions compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
- Source sequence(s)
-
AC115618, AF196969
- UniProtKB/TrEMBL
- B4DF03, B9A6M7
- Conserved Domains (1) summary
-
- smart00164
Location:229 → 458
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_001348264.2 → NP_001335193.1 TBC1 domain family member 25 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice junction compared to variant 1. The resulting isoform (d) has a shorter and distinct N-terminus compared to isoform a. Variants 4 and 5 both encode the same isoform (d).
- Source sequence(s)
-
AC115618, AF196969
- UniProtKB/TrEMBL
-
B4DGU3
- Conserved Domains (1) summary
-
- smart00164
Location:167 → 396
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_001348265.2 → NP_001335194.1 TBC1 domain family member 25 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses two alternate splice junctions compared to variant 1. The resulting isoform (d) has a shorter and distinct N-terminus compared to isoform a. Variants 4 and 5 both encode the same isoform (d).
- Source sequence(s)
-
AC115618, AF196969
- UniProtKB/TrEMBL
-
B4DGU3
- Conserved Domains (1) summary
-
- smart00164
Location:167 → 396
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
-
NM_002536.4 → NP_002527.1 TBC1 domain family member 25 isoform c
See identical proteins and their annotated locations for NP_002527.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (c) has the same N- and C-termini but is shorter compared to isoform a.
- Source sequence(s)
-
AC115618, AF196969, BC101817, BU630180, HY154299
- Consensus CDS
-
CCDS35242.1
- UniProtKB/Swiss-Prot
- Q08AN9, Q3MII4, Q3MII6, Q8TAR9
- UniProtKB/TrEMBL
-
B9A6M7
- Related
- ENSP00000365962.4, ENST00000376771.9
- Conserved Domains (1) summary
-
- smart00164
Location:225 → 454
- TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
RNA
-
NR_145494.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969, AK298884, BU630180
-
NR_145495.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969
-
NR_145496.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969, BU630180, DA031057
-
NR_145497.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969, BU630180, DC309515, HY154299
-
NR_145498.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969
-
NR_145499.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969
-
NR_145500.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969
-
NR_145501.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969, BU630180, DA688823, HY154299
-
NR_145502.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC115618, AF196969, BC143395, BU630180, HY154299
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
48539714..48562609
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
47948728..47971622
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001006113.1: Suppressed sequence
- Description
- NM_001006113.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.