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    LINC01657 long intergenic non-protein coding RNA 1657 [ Homo sapiens (human) ]

    Gene ID: 101928751, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01657provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1657provided by HGNC
    Primary source
    HGNC:HGNC:52445
    See related
    Ensembl:ENSG00000224718 AllianceGenome:HGNC:52445
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01657 in Genome Data Viewer
    Location:
    1q25.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (175877343..175880464)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (175232687..175235794)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (175846479..175849600)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371623 Neighboring gene Sharpr-MPRA regulatory region 1508 Neighboring gene ribosomal protein S29 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2135 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2136 Neighboring gene tenascin R Neighboring gene NANOG hESC enhancer GRCh37_chr1:175369460-175369988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175532897-175533398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175533399-175533898 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2138 Neighboring gene MPRA-validated peak472 silencer Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:175777677-175778299 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:175801421-175801962 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:175801963-175802504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:175803681-175804238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175829545-175830046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:175830047-175830546 Neighboring gene uncharacterized LOC124904458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2139 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:175885507-175885694 Neighboring gene long intergenic non-protein coding RNA 2803 Neighboring gene ribosomal protein S29 pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125964.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139411
      Related
      ENST00000457217.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      175877343..175880464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      175232687..175235794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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