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    LOC284788 uncharacterized LOC284788 [ Homo sapiens (human) ]

    Gene ID: 284788, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC284788
    Gene description
    uncharacterized LOC284788
    See related
    Ensembl:ENSG00000204684
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.2) See more
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    Genomic context

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    See LOC284788 in Genome Data Viewer
    Location:
    20p11.21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (22400333..22420643, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (22457882..22478213, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (22380971..22401281, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1427 Neighboring gene Sharpr-MPRA regulatory region 5495 Neighboring gene BBLN pseudogene 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:22370619-22371818 Neighboring gene VISTA enhancer hs2547 Neighboring gene Sharpr-MPRA regulatory region 10803 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:22392180-22393379 Neighboring gene FOXA motif-containing MPRA enhancer 246 Neighboring gene uncharacterized LOC105372562 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:22436641-22437455 Neighboring gene uncharacterized LOC105372563

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027089.2 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (1) is the longer transcript.
      Source sequence(s)
      BC033532, KF456862
      Related
      ENST00000377121.1

    2. NR_027090.1 RNA Sequence

      Status: PREDICTED

      Description
      Transcript Variant: This variant (2) omits an exon compared to variant 1.
      Source sequence(s)
      BC033532, BC144090
      Related
      ENST00000664479.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      22400333..22420643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      22457882..22478213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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