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    LINC01487 long intergenic non-protein coding RNA 1487 [ Homo sapiens (human) ]

    Gene ID: 101928190, updated on 17-Aug-2024

    Summary

    Official Symbol
    LINC01487provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1487provided by HGNC
    Primary source
    HGNC:HGNC:51139
    See related
    Ensembl:ENSG00000241336 AllianceGenome:HGNC:51139
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.6) See more
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    Genomic context

    Location:
    3q25.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (155240945..155243124)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (158014926..158017105)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (154958734..154960913)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374171 Neighboring gene NANOG hESC enhancer GRCh37_chr3:154639118-154639653 Neighboring gene Sharpr-MPRA regulatory region 12262 Neighboring gene membrane metalloendopeptidase Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:154842003-154842759 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:154842760-154843515 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:154896874-154897105 Neighboring gene Sharpr-MPRA regulatory region 4432 Neighboring gene MPRA-validated peak4871 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:154999620-155000162 Neighboring gene poly(A) binding protein cytoplasmic 1 pseudogene 10 Neighboring gene small transmembrane regulator of ion transport 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125399.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BG772196, BU570602
      Related
      ENST00000490497.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      155240945..155243124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      158014926..158017105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)