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    LINC02401 long intergenic non-protein coding RNA 2401 [ Homo sapiens (human) ]

    Gene ID: 101929084, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02401provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2401provided by HGNC
    Primary source
    HGNC:HGNC:53328
    See related
    Ensembl:ENSG00000257762 AllianceGenome:HGNC:53328
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02401 in Genome Data Viewer
    Location:
    12q23.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (103547794..103559815)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (103509004..103521025)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (103941572..103953593)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene chromosome 12 open reading frame 42 Neighboring gene uncharacterized LOC105369945 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6893 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6895 Neighboring gene glutaryl-CoA dehydrogenase, mitochondrial-like Neighboring gene Sharpr-MPRA regulatory region 5508 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:103954215-103955414 Neighboring gene U8 small nucleolar RNA Neighboring gene stabilin 2 Neighboring gene uncharacterized LOC105369946

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110103.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC084364
      Related
      ENST00000550185.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      103547794..103559815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      103509004..103521025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)