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    LINC02250 long intergenic non-protein coding RNA 2250 [ Homo sapiens (human) ]

    Gene ID: 105370737, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02250provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2250provided by HGNC
    Primary source
    HGNC:HGNC:53148
    See related
    Ensembl:ENSG00000235731 AllianceGenome:HGNC:53148
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02250 in Genome Data Viewer
    Location:
    15q11.2-q12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (25456271..25578806, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (23192905..23316544, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (25701418..25823953, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA host gene 14 Neighboring gene small nucleolar RNA, C/D box 109B Neighboring gene Sharpr-MPRA regulatory region 5757 Neighboring gene ubiquitin protein ligase E3A Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr15:25683287-25684232 and GRCh37_chr15:25684233-25685178 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:25726194-25726733 Neighboring gene Sharpr-MPRA regulatory region 718 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:25789643-25790842 Neighboring gene uncharacterized LOC107984789 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:25808594-25809158 Neighboring gene uncharacterized LOC124903448 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:25888031-25888974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25895885-25896385 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25917854-25918562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25918563-25919270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:25940327-25940827 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:25941814-25942360 Neighboring gene ATPase phospholipid transporting 10A (putative) Neighboring gene RNA, 5S ribosomal pseudogene 390

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187214.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC023449, AC124997
      Related
      ENST00000651932.1
    2. NR_187215.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC023449, AC124997
      Related
      ENST00000665366.1
    3. NR_187216.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC023449, AC124997
      Related
      ENST00000422117.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      25456271..25578806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      23192905..23316544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)