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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_005451.5 → NP_005442.2 PDZ and LIM domain protein 7 isoform 1
See identical proteins and their annotated locations for NP_005442.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BC001093, HY026171
- Consensus CDS
-
CCDS4422.1
- UniProtKB/Swiss-Prot
- Q14250, Q5XG82, Q6NVZ5, Q96C91, Q9BXB8, Q9BXB9, Q9NR12
- Related
- ENSP00000348099.2, ENST00000355841.7
- Conserved Domains (5) summary
-
- cd09452
Location:282 → 333
- LIM1_Enigma; The first LIM domain of Enigma
- cd09456
Location:341 → 392
- LIM2_Enigma; The second LIM domain of Enigma
- cd09458
Location:400 → 454
- LIM3_Enigma; The third LIM domain of Enigma
- cd00992
Location:5 → 79
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl26464
Location:81 → 254
- Atrophin-1; Atrophin-1 family
-
NM_203352.3 → NP_976227.1 PDZ and LIM domain protein 7 isoform 2
See identical proteins and their annotated locations for NP_976227.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2 which is shorter than isoform 1.
- Source sequence(s)
-
AF345905, BC001093, HY026171
- Consensus CDS
-
CCDS4423.1
- UniProtKB/Swiss-Prot
-
Q9NR12
- Related
- ENSP00000352964.2, ENST00000359895.6
- Conserved Domains (5) summary
-
- cd09452
Location:248 → 299
- LIM1_Enigma; The first LIM domain of Enigma
- cd09456
Location:307 → 358
- LIM2_Enigma; The second LIM domain of Enigma
- cd09458
Location:366 → 420
- LIM3_Enigma; The third LIM domain of Enigma
- cd00992
Location:5 → 79
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam15936
Location:93 → 147
- DUF4749; Domain of unknown function (DUF4749)
-
NM_213636.3 → NP_998801.1 PDZ and LIM domain protein 7 isoform 4
See identical proteins and their annotated locations for NP_998801.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks several exons and has an alternate 3' terminal exon, compared to variant 1. The resulting isoform (4) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
BC014521, HY026171
- Consensus CDS
-
CCDS4424.1
- UniProtKB/TrEMBL
-
H7BYK4
- Related
- ENSP00000347776.2, ENST00000355572.6
- Conserved Domains (1) summary
-
- cd00992
Location:5 → 79
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
RNA
-
NR_103804.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) has an alternate splice site in the central region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC001093, BC067806, BU956109, HY026171
- Related
-
ENST00000486828.6
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
177483394..177497604 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
178026382..178040598 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_203353.1: Suppressed sequence
- Description
- NM_203353.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.