U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINGO1-AS1 LINGO1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 253044, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINGO1-AS1provided by HGNC
    Official Full Name
    LINGO1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:27368
    See related
    Ensembl:ENSG00000259666 AllianceGenome:HGNC:27368
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.8) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINGO1-AS1 in Genome Data Viewer
    Location:
    15q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (77641764..77649240)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (75502087..75509563)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (77934106..77941582)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929457 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77817641-77818484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77819329-77820172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77821015-77821858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77821859-77822700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77822701-77823544 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:77826181-77826682 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:77826683-77827182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77833845-77834524 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:77836028-77836242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77844823-77845466 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77846672-77847265 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77847266-77847858 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77849047-77849640 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77849641-77850232 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77857721-77858585 Neighboring gene uncharacterized LOC105370906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77863406-77863906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77863907-77864407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77866115-77866615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77874268-77874768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77876983-77877794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77892119-77892619 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:77893796-77893952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77897574-77898293 Neighboring gene Sharpr-MPRA regulatory region 5143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77903637-77904464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77906671-77907170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77908397-77909223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77913981-77914496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77914497-77915012 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77916045-77916560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77922113-77922678 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77926073-77926636 Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77937918-77938418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77942484-77942984 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77952267-77953188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77959162-77959662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77959663-77960163 Neighboring gene LINGO1 antisense RNA 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77963681-77964597 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77969616-77970141 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78004126-78004664 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:78005958-78006458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78029912-78030425 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78031453-78031964 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78031965-78032478 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78032479-78032990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78033504-78034015 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:78039893-78040461 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78040462-78041029 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:78041067-78041828 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:78044539-78044736 Neighboring gene MPRA-validated peak2394 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78076600-78077183 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78077259-78077760 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78090197-78090896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78092471-78092970 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78096516-78097110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78100953-78101820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78103235-78103736 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78110270-78110904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:78110905-78111539 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9899 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78156801-78157306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78157307-78157812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78161208-78161708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78163573-78164411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78171267-78171767 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78180036-78180778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78196402-78196966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:78196967-78197531 Neighboring gene chondroitin sulfate proteoglycan 4 pseudogene 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045123.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC042092
      Related
      ENST00000558691.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      77641764..77649240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      75502087..75509563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001242772.1: Suppressed sequence

      Description
      NM_001242772.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.