U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LDC1P leucine decarboxylase 1, pseudogene [ Homo sapiens (human) ]

    Gene ID: 149086, updated on 17-Sep-2024

    Summary

    Official Symbol
    LDC1Pprovided by HGNC
    Official Full Name
    leucine decarboxylase 1, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:49677
    See related
    Ensembl:ENSG00000293391 AllianceGenome:HGNC:49677
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01225
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LDC1P in Genome Data Viewer
    Location:
    1p35.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (31500085..31508566)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (31357785..31366266)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (31971836..31974167)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 46 Neighboring gene RNA, U6 small nuclear 40, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:31972634-31973833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 643 Neighboring gene long intergenic non-protein coding RNA 1226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 570 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 645 Neighboring gene uncharacterized LOC124903917 Neighboring gene Sharpr-MPRA regulatory region 14090

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • LINC01225 pseudogene
    • long intergenic non-protein coding RNA 1225
    • ornithine decarboxylase pseudogene

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034112.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC209007
      Related
      ENST00000562339.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      31500085..31508566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      31357785..31366266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)