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    MAGEC2 MAGE family member C2 [ Homo sapiens (human) ]

    Gene ID: 51438, updated on 2-Nov-2024

    Summary

    Official Symbol
    MAGEC2provided by HGNC
    Official Full Name
    MAGE family member C2provided by HGNC
    Primary source
    HGNC:HGNC:13574
    See related
    Ensembl:ENSG00000046774 MIM:300468; AllianceGenome:HGNC:13574
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT10; HCA587; MAGEE1
    Summary
    This gene is a member of the MAGEC gene family. It is not expressed in normal tissues, except for testis, and is expressed in tumors of various histological types. This gene and the other MAGEC genes are clustered on chromosome Xq26-q27. [provided by RefSeq, Oct 2009]
    Expression
    Restricted expression toward testis (RPKM 15.6) See more
    Orthologs
    NEW
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    Genomic context

    See MAGEC2 in Genome Data Viewer
    Location:
    Xq27.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (142202342..142205290, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (140511041..140513989, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (141290128..141293076, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MAGE family member C2 pseudogene Neighboring gene MAGE family member C3 pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:141291591-141292790 Neighboring gene MAGE family member C3 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:141320934-141321725 Neighboring gene zinc finger MYM-type containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:141478562-141479062 Neighboring gene RNA, 5S ribosomal pseudogene 516

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    melanoma-associated antigen C2
    Names
    MAGE-C2 antigen
    MAGE-E1 antigen
    cancer/testis antigen 10
    hepatocellular cancer antigen 587
    hepatocellular carcinoma-associated antigen 587
    melanoma antigen family C, 2
    melanoma antigen family C2
    melanoma antigen, family E, 1, cancer/testis specific

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_015872.1 RefSeqGene

      Range
      5001..7949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_016249.4NP_057333.1  melanoma-associated antigen C2

      See identical proteins and their annotated locations for NP_057333.1

      Status: REVIEWED

      Source sequence(s)
      AF116194, BC005891, BC013318, BM548987, BP370466
      Consensus CDS
      CCDS14678.1
      UniProtKB/Swiss-Prot
      Q5JZ00, Q96D45, Q9P1M6, Q9P1M7, Q9UBF1
      UniProtKB/TrEMBL
      Q6IAI7
      Related
      ENSP00000354660.2, ENST00000247452.4
      Conserved Domains (1) summary
      pfam01454
      Location:229308
      MAGE; MAGE family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      142202342..142205290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      140511041..140513989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)