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    LINC01913 long intergenic non-protein coding RNA 1913 [ Homo sapiens (human) ]

    Gene ID: 388942, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01913provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1913provided by HGNC
    Primary source
    HGNC:HGNC:52732
    See related
    Ensembl:ENSG00000214691 AllianceGenome:HGNC:52732
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01913 in Genome Data Viewer
    Location:
    2p21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (41877555..41894046)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (41883041..41899531)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (42104695..42121186)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S12 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11389 Neighboring gene RNA, U4 small nuclear 63, pseudogene Neighboring gene MPRA-validated peak3674 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11390 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:42157683-42158882 Neighboring gene long intergenic non-protein coding RNA 1914 Neighboring gene uncharacterized LOC124905996 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:42164451-42165045 Neighboring gene Sharpr-MPRA regulatory region 382 Neighboring gene long intergenic non-protein coding RNA 2898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42166828-42167422 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42175498-42176148

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033996.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK126414, CR627372
      Related
      ENST00000398796.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      41877555..41894046
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      41883041..41899531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)