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    STXBP5-AS1 STXBP5 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 729178, updated on 17-Sep-2024

    Summary

    Official Symbol
    STXBP5-AS1provided by HGNC
    Official Full Name
    STXBP5 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44183
    See related
    Ensembl:ENSG00000233452 AllianceGenome:HGNC:44183
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in brain (RPKM 1.3), bone marrow (RPKM 1.3) and 24 other tissues See more
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    Genomic context

    See STXBP5-AS1 in Genome Data Viewer
    Location:
    6q24.3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (146841388..147204614, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (148034620..148397903, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (147162524..147525750, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene androglobin Neighboring gene uncharacterized LOC105378040 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:147150949-147151716 Neighboring gene katanin regulatory subunit B1 like 1 pseudogene 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25232 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17645 Neighboring gene Sharpr-MPRA regulatory region 4352 Neighboring gene Sharpr-MPRA regulatory region 12413 Neighboring gene Sharpr-MPRA regulatory region 4624 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:147365163-147366362 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:147374300-147374964 Neighboring gene uncharacterized LOC124901422 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17647 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17648 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17649 Neighboring gene lung adenocarcinoma associated transcript 1 Neighboring gene syntaxin binding protein 5 Neighboring gene MPRA-validated peak6197 silencer Neighboring gene MPRA-validated peak6199 silencer Neighboring gene MPRA-validated peak6200 silencer Neighboring gene uncharacterized LOC124901421 Neighboring gene uncharacterized LOC105378043 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:147759841-147760442 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:147760443-147761044 Neighboring gene YAP1 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    General gene information

    Markers

    Other Names

    • STXBP5 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034115.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK091594, BC044307, BQ269903, BU078216, DB318281
      Related
      ENST00000654921.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      146841388..147204614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      148034620..148397903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)