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    SMAD1-AS2 SMAD1 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 101927659, updated on 22-Oct-2024

    Summary

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    Official Symbol
    SMAD1-AS2provided by HGNC
    Official Full Name
    SMAD1 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:49381
    See related
    Ensembl:ENSG00000250582 AllianceGenome:HGNC:49381
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 10.5) See more
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    Genomic context

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    See SMAD1-AS2 in Genome Data Viewer
    Location:
    4q31.21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (145497049..145502980, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (148814504..148820434, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (146418201..146424132, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene reticulon 3 pseudogene 1 Neighboring gene NMNAT1 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15727 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15729 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15730 Neighboring gene SMAD family member 1 Neighboring gene MPRA-validated peak5131 silencer Neighboring gene SMAD1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:146487383-146487884 Neighboring gene uncharacterized LOC285422

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108077.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW103823, BC042377, BX098661, HY049088
      Related
      ENST00000508936.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      145497049..145502980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      148814504..148820434 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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