U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Lce1a1 late cornified envelope 1A1 [ Mus musculus (house mouse) ]

    Gene ID: 67127, updated on 17-Aug-2024

    Summary

    Official Symbol
    Lce1a1provided by MGI
    Official Full Name
    late cornified envelope 1A1provided by MGI
    Primary source
    MGI:MGI:1914377
    See related
    Ensembl:ENSMUSG00000057609 AllianceGenome:MGI:1914377
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sprrl3; 2200008B06Rik
    Expression
    Restricted expression toward stomach adult (RPKM 124.3) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lce1a1 in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92553839..92555614, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92646532..92648307, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35639 Neighboring gene late cornified envelope 6A Neighboring gene predicted gene, 35699 Neighboring gene late cornified envelope 1B Neighboring gene ribosomal protein L13, pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General protein information

    Preferred Names
    late cornified envelope 1A1
    Names
    small proline rich-like 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025984.2NP_080260.1  late cornified envelope 1A1

      See identical proteins and their annotated locations for NP_080260.1

      Status: VALIDATED

      Source sequence(s)
      AA755466, AK008643
      Consensus CDS
      CCDS17562.1
      UniProtKB/TrEMBL
      Q9CQH5
      Related
      ENSMUSP00000073776.6, ENSMUST00000074142.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92553839..92555614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)