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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001136067.2 → NP_001129539.1 NF-kappa-B essential modulator isoform 3
See identical proteins and their annotated locations for NP_001129539.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
- Source sequence(s)
-
AL669976, AY112937
- Consensus CDS
-
CCDS53108.1
- UniProtKB/TrEMBL
-
Q7TSS3
- Related
- ENSMUSP00000004330.4, ENSMUST00000004330.10
- Conserved Domains (4) summary
-
- cd09803
Location:269 → 355
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:67 → 303
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:62 → 128
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:404 → 429
- zf_C2H2_10; C2H2 type zinc-finger
-
NM_001161421.1 → NP_001154893.1 NF-kappa-B essential modulator isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 3. The resulting isoform (4) has the same N- and C-termini but is 1 aa shorter compared to isoform 3.
- Source sequence(s)
-
AK037020, AL669976, AY112937
- UniProtKB/TrEMBL
- Q7TSS3, Q8VC91
- Conserved Domains (3) summary
-
- cd09803
Location:268 → 354
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- pfam11577
Location:62 → 129
- NEMO; NF-kappa-B essential modulator NEMO
- cl00459
Location:185 → 297
- MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily
-
NM_001161422.1 → NP_001154894.1 NF-kappa-B essential modulator isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence compared to variant 3. The resulting isoform (5) has a shorter and distinct N-terminus compared to isoform 3.
- Source sequence(s)
-
AL669976, AY112937, CN701499
- Consensus CDS
-
CCDS53109.1
- UniProtKB/TrEMBL
-
E9Q2Y3
- Related
- ENSMUSP00000109765.3, ENSMUST00000114130.9
- Conserved Domains (3) summary
-
- cd09803
Location:263 → 349
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- pfam11577
Location:56 → 123
- NEMO; NF-kappa-B essential modulator NEMO
- cl00459
Location:180 → 292
- MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily
-
NM_001161423.1 → NP_001154895.1 NF-kappa-B essential modulator isoform 1
See identical proteins and their annotated locations for NP_001154895.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and coding sequence compared to variant 3. The resulting isoform (1) is shorter at the N-terminus compared to isoform 3. Variants 1 and 6 both encode the same isoform.
- Source sequence(s)
-
AK037020, AL669976, CJ099503, CN717929
- Consensus CDS
-
CCDS41023.1
- UniProtKB/Swiss-Prot
- O88522, Q924H4
- Related
- ENSMUSP00000126770.2, ENSMUST00000164101.8
- Conserved Domains (4) summary
-
- cd09803
Location:251 → 337
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 285
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:386 → 411
- zf_C2H2_10; C2H2 type zinc-finger
-
NM_001161424.1 → NP_001154896.1 NF-kappa-B essential modulator isoform 2
See identical proteins and their annotated locations for NP_001154896.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 3. The resulting isoform (2) is shorter at the N-terminus and lacks an internal aa compared to isoform 3. Variants 2 and 7 both encode the same isoform.
- Source sequence(s)
-
AK037020, AL669976, CJ099503, CV556906
- Consensus CDS
-
CCDS30233.1
- UniProtKB/TrEMBL
-
Q8VC91
- Related
- ENSMUSP00000136573.2, ENSMUST00000180230.8
- Conserved Domains (4) summary
-
- cd09803
Location:250 → 336
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 284
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:385 → 410
- zf_C2H2_10; C2H2 type zinc-finger
-
NM_010547.2 → NP_034677.2 NF-kappa-B essential modulator isoform 1
See identical proteins and their annotated locations for NP_034677.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR and coding sequence compared to variant 3. The resulting isoform (1) is shorter at the N-terminus compared to isoform 3. Variants 1 and 6 both encode the same isoform.
- Source sequence(s)
-
AL669976, AY112937, BY768708
- Consensus CDS
-
CCDS41023.1
- UniProtKB/Swiss-Prot
- O88522, Q924H4
- Related
- ENSMUSP00000109762.2, ENSMUST00000114127.8
- Conserved Domains (4) summary
-
- cd09803
Location:251 → 337
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 285
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:386 → 411
- zf_C2H2_10; C2H2 type zinc-finger
-
NM_178590.4 → NP_848705.1 NF-kappa-B essential modulator isoform 2
See identical proteins and their annotated locations for NP_848705.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 3. The resulting isoform (2) is shorter at the N-terminus and lacks an internal aa compared to isoform 3. Variants 2 and 7 both encode the same isoform.
- Source sequence(s)
-
AK037020, AL669976, BY768708
- Consensus CDS
-
CCDS30233.1
- UniProtKB/TrEMBL
-
Q8VC91
- Related
- ENSMUSP00000064017.4, ENSMUST00000064407.10
- Conserved Domains (4) summary
-
- cd09803
Location:250 → 336
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 284
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:385 → 410
- zf_C2H2_10; C2H2 type zinc-finger
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000086.8 Reference GRCm39 C57BL/6J
- Range
-
73436883..73498013
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006527848.5 → XP_006527911.1 NF-kappa-B essential modulator isoform X1
See identical proteins and their annotated locations for XP_006527911.1
- UniProtKB/TrEMBL
-
Q7TSS3
- Conserved Domains (4) summary
-
- cd09803
Location:269 → 355
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:67 → 303
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:62 → 128
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:404 → 429
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_006527852.4 → XP_006527915.1 NF-kappa-B essential modulator isoform X3
See identical proteins and their annotated locations for XP_006527915.1
- UniProtKB/Swiss-Prot
- O88522, Q924H4
- Conserved Domains (4) summary
-
- cd09803
Location:251 → 337
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 285
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:386 → 411
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_006527853.5 → XP_006527916.1 NF-kappa-B essential modulator isoform X4
See identical proteins and their annotated locations for XP_006527916.1
- UniProtKB/TrEMBL
-
Q8VC91
- Related
- ENSMUSP00000109764.3, ENSMUST00000114129.9
- Conserved Domains (4) summary
-
- cd09803
Location:250 → 336
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 284
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:385 → 410
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_006527847.5 → XP_006527910.1 NF-kappa-B essential modulator isoform X1
See identical proteins and their annotated locations for XP_006527910.1
- UniProtKB/TrEMBL
-
Q7TSS3
- Conserved Domains (4) summary
-
- cd09803
Location:269 → 355
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:67 → 303
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:62 → 128
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:404 → 429
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_006527850.4 → XP_006527913.1 NF-kappa-B essential modulator isoform X3
See identical proteins and their annotated locations for XP_006527913.1
- UniProtKB/Swiss-Prot
- O88522, Q924H4
- Related
- ENSMUSP00000109763.2, ENSMUST00000114128.8
- Conserved Domains (4) summary
-
- cd09803
Location:251 → 337
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 285
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:386 → 411
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_006527851.4 → XP_006527914.1 NF-kappa-B essential modulator isoform X3
See identical proteins and their annotated locations for XP_006527914.1
- UniProtKB/Swiss-Prot
- O88522, Q924H4
- Conserved Domains (4) summary
-
- cd09803
Location:251 → 337
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 285
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:386 → 411
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_006527849.3 → XP_006527912.1 NF-kappa-B essential modulator isoform X2
- Conserved Domains (4) summary
-
- cd09803
Location:257 → 343
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:55 → 291
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:50 → 116
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:392 → 417
- zf_C2H2_10; C2H2 type zinc-finger
-
XM_011247527.4 → XP_011245829.1 NF-kappa-B essential modulator isoform X3
See identical proteins and their annotated locations for XP_011245829.1
- UniProtKB/Swiss-Prot
- O88522, Q924H4
- Conserved Domains (4) summary
-
- cd09803
Location:251 → 337
- UBAN; polyubiquitin binding domain of NEMO and related proteins
- TIGR02168
Location:49 → 285
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
- pfam11577
Location:44 → 110
- NEMO; NF-kappa-B essential modulator NEMO
- pfam18414
Location:386 → 411
- zf_C2H2_10; C2H2 type zinc-finger