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    B3gnt9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 [ Mus musculus (house mouse) ]

    Gene ID: 97440, updated on 2-Nov-2024

    Summary

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    Official Symbol
    B3gnt9provided by MGI
    Official Full Name
    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9provided by MGI
    Primary source
    MGI:MGI:2142841
    See related
    Ensembl:ENSMUSG00000069920 AllianceGenome:MGI:2142841
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BGnT-9; beta-1; 3-Gn-T9; B3gnt9-ps; beta3Gn-T9
    Summary
    Predicted to enable UDP-glycosyltransferase activity. Predicted to be involved in poly-N-acetyllactosamine biosynthetic process and protein O-linked glycosylation. Predicted to be active in Golgi membrane. Orthologous to human B3GNT9 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in lung adult (RPKM 19.6), ovary adult (RPKM 18.3) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See B3gnt9 in Genome Data Viewer
    Location:
    8 D3; 8 53.04 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (105979270..105981895, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (105252638..105255250, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 22063 Neighboring gene core binding factor beta Neighboring gene expressed sequence AI225912 Neighboring gene STARR-seq mESC enhancer starr_22523 Neighboring gene STARR-seq mESC enhancer starr_22525 Neighboring gene STARR-seq mESC enhancer starr_22526 Neighboring gene phagosome assembly factor 1 Neighboring gene STARR-positive B cell enhancer mm9_chr8:107778026-107778327 Neighboring gene STARR-positive B cell enhancer ABC_E8260 Neighboring gene TNFRSF1A-associated via death domain Neighboring gene F-box and leucine-rich repeat protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC117964

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in poly-N-acetyllactosamine biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein O-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
    Names
    UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene
    beta-1,3-Gn-T9
    beta-1,3-N-acetylglucosaminyltransferase 9
    beta-1,3-galactosyltransferase-related protein
    NP_001258844.1
    NP_849210.1
    XP_006531604.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271915.1 → NP_001258844.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9

      See identical proteins and their annotated locations for NP_001258844.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate internal segment, compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK032108, AK169360, CB590403
      Consensus CDS
      CCDS40455.1
      UniProtKB/Swiss-Prot
      Q8BK98, Q8VI16
      Related
      ENSMUSP00000130840.2, ENSMUST00000136822.3
      Conserved Domains (1) summary
      cl21608
      Location:132 → 331
      Galactosyl_T; Galactosyltransferase

    2. NM_178879.4 → NP_849210.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9

      See identical proteins and their annotated locations for NP_849210.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) lacks an alternate internal segment in the 5' UTR, compared to variant 2. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK032108, AK169360, BY231124, CB590403
      Consensus CDS
      CCDS40455.1
      UniProtKB/Swiss-Prot
      Q8BK98, Q8VI16
      Related
      ENSMUSP00000133023.2, ENSMUST00000093217.9
      Conserved Domains (1) summary
      cl21608
      Location:132 → 331
      Galactosyl_T; Galactosyltransferase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      105979270..105981895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531541.5 → XP_006531604.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 isoform X1

      See identical proteins and their annotated locations for XP_006531604.1

      UniProtKB/Swiss-Prot
      Q8BK98, Q8VI16
      Conserved Domains (1) summary
      cl21608
      Location:132 → 331
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VI16.1 GenPept UniProtKB/Swiss-Prot:Q8VI16

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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