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    LINC01221 long intergenic non-protein coding RNA 1221 [ Homo sapiens (human) ]

    Gene ID: 104266961, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01221provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1221provided by HGNC
    Primary source
    HGNC:HGNC:49671
    See related
    Ensembl:ENSG00000235492 AllianceGenome:HGNC:49671
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_00000366
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01221 in Genome Data Viewer
    Location:
    1q32.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (199016133..199076735)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (198274829..198335432)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (198985262..199045864)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR181A1 host gene Neighboring gene microRNA 181a-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2287 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2288 Neighboring gene ribosomal protein S2 pseudogene 9 Neighboring gene long intergenic non-protein coding RNA 1222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2289 Neighboring gene uncharacterized LOC107985243 Neighboring gene NANOG hESC enhancer GRCh37_chr1:199085580-199086086 Neighboring gene long intergenic non-protein coding RNA 2789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:199187681-199188395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2293 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:199241403-199242602 Neighboring gene ribosomal protein L23a pseudogene 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126351.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC096631, AC105941
      Related
      ENST00000432488.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      199016133..199076735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      198274829..198335432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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